Updating r version mac
Restore your packages By now you have a new R version installed but without all your favorite packages. The other problem that happens is more subtle. This may come as a surprise to users, but the solution is straightforward. Upgrade is usually something that happens with apt-get upgrade or yum update, and user might not be aware when it occurs. In these cases, a user or system administrator should check which version of R each package was built with, and reinstall those packages that were built with an old version of R, as described above.
User library is versioned to minor. Additionally, Linux systems often have different people administering them and using them. Every new R installation comes with a few of them the base packages. Users on macOS usually have permission to write to the site library. For these two reasons, the installed version of R can change without the user being aware of it. There can be multiple site libraries, though this should not cause any differences in most use cases. The article of this document is to explain these problems, and how to fix them. When this happens, you will need to reinstall all your packages. In other installations typically on Mac and Windows , R is configured to use a new library when R has a major or minor version upgrade. On most Linux distributions, it is possible to freeze system packages like R to a specific version, and only upgrade after testing. This list is likely short since most packages get distributed via CRAN. This document will also explain the default settings for each platform, and what that means for dealing with R upgrade issues. If you are using a system like this, you can just reinstall your packages after upgrading R. If this code is run as root after an R version upgrade, then users should not need to run this code unless they have their own copies of the same packages in their personal library. The following short steps will make your life easier. Fellgernon Bit - rstats. In other cases, R will find the existing packages, but they might not work correctly. The site library has the major. The first way is to use the base R function update. Right now, Bioc-release 3. One problem is that, after upgrading to a new version of R, packages are no longer found because there is a new library. In some installations, there is more than one site library. Upgrade is usually done explicitly by user. User-installed packages go into the user library. Sometimes packages installed with a previous version of R will not work correctly with the new version of R.
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